.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "auto_paper/01_preprocessing.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        Click :ref:`here <sphx_glr_download_auto_paper_01_preprocessing.py>`
        to download the full example code

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_auto_paper_01_preprocessing.py:


Part 2: Preprocessing
=====================
Drop bad subjects and preprocess the data

.. GENERATED FROM PYTHON SOURCE LINES 7-11

.. code-block:: default


    import preprocessing_info as prep_info
    import os


.. GENERATED FROM PYTHON SOURCE LINES 12-13

Define data paths

.. GENERATED FROM PYTHON SOURCE LINES 13-30

.. code-block:: default


    # Local folder where the data have been downloaded
    cwd = os.getcwd()
    data_root = os.path.join(cwd, 'transfreq_data')
    if not os.path.exists(data_root):
        raise Exception('Cannot find data in {}. Please check.'.format(data_root))

    # Local folder where to store the output of the analysis
    data_path = os.path.join(cwd, 'transfreq_data_preproc')
    datatype = 'eeg'
    task = 'Rest'
    suffix = 'eeg'

    if os.path.exists(data_path):
        raise Exception('Folder {} already exists. Please check'.format(
            data_path))


.. GENERATED FROM PYTHON SOURCE LINES 31-32

Subjects included in analysis

.. GENERATED FROM PYTHON SOURCE LINES 32-43

.. code-block:: default


    subj_per_session = {'01': ['001', '002', '003', '004', '006', '007', '008', '009',
                               '010', '011', '012', '013', '014', '015', '016', '017',
                               '019', '020', '021', '023', '024', '025', '026', '027',
                               '028', '030', '031', '032', '033', '034', '035', '037',
                               '038', '039', '040', '041', '042', '043', '044', '045',
                               '046', '047', '048', '049', '050'],
                        '02': ['001', '002', '004', '006', '007', '008', '009', '010',
                               '011', '012', '013', '014', '015', '016', '017', '018',
                               '019', '020', '021', '023', '024', '025', '026', '027']}


.. GENERATED FROM PYTHON SOURCE LINES 44-45

Preprocess data

.. GENERATED FROM PYTHON SOURCE LINES 45-49

.. code-block:: default

    for session in subj_per_session.keys():
        for subject in subj_per_session[session]:  
            prep_info.preprocessing(data_root, datatype, subject,
                                    session, task, suffix, data_path)


.. rst-class:: sphx-glr-timing

   **Total running time of the script:** ( 0 minutes  0.000 seconds)


.. _sphx_glr_download_auto_paper_01_preprocessing.py:


.. only :: html

 .. container:: sphx-glr-footer
    :class: sphx-glr-footer-example



  .. container:: sphx-glr-download sphx-glr-download-python

     :download:`Download Python source code: 01_preprocessing.py <01_preprocessing.py>`



  .. container:: sphx-glr-download sphx-glr-download-jupyter

     :download:`Download Jupyter notebook: 01_preprocessing.ipynb <01_preprocessing.ipynb>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_